RIKEN SeminarThe 3rd Annal Meeting of Structual-Biological Whole Cell Project of Thermus thermophilus HB8July 30 (Fri) to August 1 (Sun), 2004 |
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1. The Software for Viewing the Genome Sequence and Annotations of Thermus thermophilus HB8Yuki Maruyama, Hidetoshi Yamashita, Toru Suzuki, Ryuta Komatsu, Masanari Kitagawa |
2-13. Progress Reports on the Whole Cell Project of Thermus thermophilus HB8 in RIKEN Harima Institute2. Comparative Analaysis of Thermus thermophilus HB8 ProteinsRyoji MASUI1,2, Ken KUROKAWA3, Noriko NAKAGAWA1,2, Takaho TERADA4, Mikako SHIROUZU4, Yoshinori KOYAMA5, Fumio TOKUNAGA1, Tairo OSHIMA6, Teruo YASUNAGA3, Kunio MIKI2,7, Shigeyuki YOKOYAMA2,4, Seiki KURAMITSU1,2,4 |
3. Protein Expression
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4. Protein Purification
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5. Purification Report 1
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6. Purification Report 2
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7. Purification Report 3
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8. Purification Report 4
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9. Purification Report 5
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10. Protein Crystallization
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11. List of Structural and Functional AnalysesMayumi KANAGAWA et al. |
12. DNA Microarray Analysis
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13. Database System for Managing and Sharing Experiment Information of Thermus thermophilus HB8
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14. Introduction to web based annotation system for Structural-Biological Whole Cell Project Thermus thermophilus HB8Akinobu FUKUZAKI1,2, Fumikazu KONISHI1,2, Takeshi NAGASHIMA1, Kaori IDE1,2, Mariko HATAKEYAMA1,2, Seiki KURAMITSU2,3, Akihiko KONAGAYA1,2 |
15. Inference of Genetic Networks using a Cooperative Coevolutionary AlgorithmShuhei Kimura1,2, Mariko Hatakeyama1,2, Akihiko Konagaya1,2 |
17. N-Terminal Protein Sequencing Procedure Using Bis(terpyridine)ruthenium(II) derivativeKen Masui1, Taka-aki Okamura1, Hitoshi Yamamoto1,2, Norikazu Ueyama1 |
18. Development of novel ampholyte for three-dimensional structural analysis in the free-flow isoelectric focusingKim S.-H.1, Miyatake H.1, Ueno T.2, Nagao T.2, and Miki K.1,3 |
19. Checking up on intact protein samples using DSCKatsuhide Yutani1, Masahide Sawano1, Michiyo Takehira1, Junji Nakamura2, Tomoyuki Tanaka1, Yoko Ukita1, and Shigeyuki Yokoyama1,3,4 |
20. Development of full-automated macromolecular crystallization/observation robot system HTS-80Hideyuki Miyatake1, Seong-Hoon Kim1, Itsuro Motegi2, Hirofumi Matsuzaki2, Hideyoshi Kitahara2, Akira Higuchi2, Kunio Miki1,3 |
21. Sample management system of frozen crystals at the SPring-8 RIKEN Structural Genomics BeamlinesGo Ueno1,2, Raita Hirose3, Koh Ida1, Takashi Kumasaka1,4, Masaki Yamamoto1 |
23. Lafire: an automatic refinement program for protein crystallographyMin Yao, Yong Zhou, Isao Tanaka |
24. Automated crystallographic supporting system for high-throughput protein structure determinationYukuhiko Asada1, Hideyuki Taka1,2, Michihiro Sugahara1, Haruhiko Ayama1, Hisashi Ukawa1,2, Naoki kunishima1 |
25. Crystal structure of dehydroquinate synthase from Thermus thermophilus HB8Michihiro Sugahara, Yuichi Nodake, Mitsuaki Sugahara, Naoki Kunishima |
26. Crystal Structure Of Indole-3-Glycerol Phosphate Synthase From Thermus thermophilus HB8Bagautdin Bagautdinov, Yayoi Fujimoto, Tahir H Tahirov |
27. Double Substrate Recognition of Acetylornithine AminotransferaseIkuko Miyahara1,2, Mitsuyoshi Matsumura1,2, Masaru Goto1, Rie Omi1, Ken Hirotsu1,2 |
28. X-ray Structures of Threonine dehydrogenase ComplexesTadayuki Yao1,2, Rie Omi1, Masaru Goto1, Ikuko Miyahara1,2, Ken Hirotsu1,2 |
29. Crystal Structure of Histidinol Phosphate Phosphatase from Thermus ｔhermophilus HB8Rie Omi1, Masaru Goto1, Ikuko Miyahara1,2 and Ken Hirotsu1,2 |
30. Substrate-recognition mechanism of homoisocitrate dehydrogenase from an extreme thermophile, Thermus thermophilus, as revealed by crystallographic and mutational analysisJunichi Miyazaki1, Shinya Fushinobu2, Makoto Nishiyama1 |
31. Structural and Functional Analysis of NDP Kinase from Thermus thermophilus HB8Shunsaku TAKEISHI1, Noriko NAKAGAWA1,2, Ryoji MASUI1,2, and Seiki KURAMITSU1,2 |
32. Crystallographic analysis of proteins in the purine nucleotide biosynthetic pathwayGen-ichi Sampei1,2, Seiki Baba3, Takeshi Ishii1, Hiroya Kawai3, Hisaaki Yanai1,2, Mayumi Kanagawa2,3, and Gota Kawai2,3 |
33. Crystal structure of GMP synthetase from Thermus thermophilus HB8Takeshi Ishii1, Seiki Baba2, Mayumi Kanagawa2,3, Hisaaki Yanai1,3, Hiroya Kawai2, Akio Ebihara3, Noriko Nakagawa3, Gota Kawai2,3 and Gen-ichi Sampei1,3 |
34. Three-Dimensional Sturcture and Reaction Mechanism of Biotin-Dependent EnzymesShinji SUEDA1, Md. Nurul Islam1, Jin Yong-Biao1, Hiroki Kondo1,2 |
35. Reaction mechanism of GTP cyclohydrolase IYoko TANAKA1,2, Noriko NAKAGAWA1,2, Ryoji MASUI1,2 and Seiki KURAMITSU1,2 |
36. Crystal Structure of Dihydroneopterin Aldolase from Thermus thermophilus HB8Tamao Hisano1, Shinya Satoh1, Kunio Miki1,2 |
37. X-ray Structure of Thermus thermophilus HB8 L-Aspartate-a-Decarboxylase at Atomic ResolutionOsamu Nakajima1,2, Masaru Goto1, Rie Omi1, Ikuko Miyahara1,2, Ken Hirotu1,2 |
38. Crystallization and Preliminary Crystallographic Analysis of Short-Chain Dehydrogenase/Reductase (SDR) from Thermus thermophilus HB8Tomoyasu Kichise1, Kazuki Takeda1, Tamao Hisano1, Kunio Miki1,2 |
39. Crystal structure of the C subunit of V-type ATPase from Thermus thermophilus HB8Nobutaka Numoto1, Akiko Kita1, Kunio Miki1,2 |
40. Inhibition of Thermus thermophilus HB8 Thioredoxin Activity by Platinum(II) ComplexMasahiro Kato1, Hitoshi Yamamoto1,2, Taka-aki Okamura1, Ryoji Masui1,2, Seiki Kuramitsu1,2, Norikazu Ueyama1 |
42. Structural analysis of mercuric reductase from Thermus thermophilus HB8Hiroshi Hashimoto, Naoki Shichijo, Toshiyuki Shimizu, Mamoru Sato |
43. Crystal structure of P-protein of the glycine cleavage system from Thermus thermophilus HB8Tadashi Nakai1,2, Noriko Nakagawa1,2, Nobuko Maoka1, Ryoji Masui1,2, Seiki Kuramitsu1,2, Nobuo Kamiya1 |
44. Crystal structure of putative phosphomannomutase from Thermus thermophilus HB8Shintaro Misaki1, Kenji Suzuki1, Naoki Kunishima2, Mitsuaki Sugawara2, Chizu Kuroishi2, Masanori Kobayashi1, Shoko Fujimoto1, Masahiro Sakurai1, Kazumi Nishijima1 |
45. Crystallographic analysis of malate dehydrogenase from thermophilic bacterium Thermus flavus and the mutant EX7 to elucidate the molecular mechanisms of their cofactor specificities and catalytic propertiesTakeo Tomita1, Shinya Fushinobu2, Makoto Nishiyama1 |
46. Biochemical and crystallographic analyses of carboxypeptidase 1 from Thermus thermophilusShiho TSUTSUI1, Woo Cheol LEE1, Kosuke ITO1, Masayuki KAMO1, Yumiko INOUE2, Koji NAGATA1, Masaru TANOKURA1,2 |
47. The crystal structure of peptide deformylase from Thermus thermophilus HB8Masayuki Kamo1, Norio Kudo1, WooCheol Lee1, Hiroyuki Motoshima2, Masaru Tanokura1,2 |
48. X-Ray Analysis of Peptideglycan Synthetase family from Thermus thermophilus HB8Shohei Kobayashi1, Fujio Matsuzaki1, Ryoko Hirooka1, Makoto Kimura1,2, Yoshimitsu Kakuta1,2 |
49. Crystallographic studies of an ABC-ATPase (TT2939) from T. thermophilus HB8Kazuki Takeda1, Kunio Miki1,2 |
50. Crystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8Wakana Iwasaki1, Hideyuki Miyatake1 and Kunio Miki1,2 |
70. MutS2 possesses a nuclease activity promoted by MutL and MutSKenji FUKUI1, Ryoji MASUI1,2, and Seiki KURAMITSU1,2 |
71. Nucleotide excision repair system of Thermus thermophilus HB8Ikumi SAITO1, Noriko NAKAGAWA2, Ryoji MASUI1,2, Seiki KURAMITSU1,2 |
72. X-ray Crystallographic Analysis of Endonuclease V from Thermus thermophilus HB8Hitomi Yamaguchi, Kei Wada, Atsushi Yamagata, Yasuhiro Takahashi and Keiichi Fukuyama |
76. The Crystal Structure of Thermus thermophilus HB8 hypothetical protein TT1253Chizuko Sasaki1, Ikuko Sugiura1, Shigetoshi Sugio1, Takashi Tamura2,3, Kenji Inagaki2,3 |
77. Thermus thermophilus TT1383 has a novel dNTP triphosphohydrolase activity stimulated by dATP and dTTPNaoyuki Kondo1, Noriko Nakagawa1,2, Ryoji Masui1,2, Seiki Kuramitsu1,2 |
78. Mutational analysis of ADP-ribose pyrophosphatase from Thermus thermophilus HB8Takushi Ooga1, Sachiko Yoshiba1, Noriko Nakagawa1, Ryoji Masui1,2 and Seiki Kuramitsu1,2 |
79. Thermus thermophilus HB8 Ndx3 protein is a diadenosine tetraphosphate (Ap4A) hydrolase that is a member of Nudix familyTakashi Nishikubo1, Ryoji Masui1,2, Seiki Kuramitsu1,2 |
80. Biochemical characterization of Ndx2 protein, a member of Nudix family from Thermus thermophilus HB8Taisuke Wakamatsu1, Takushi Ooga2, Noriko Nakagawa2, Ryoji Masui2,3 and Seiki Kuramitsu1,2,3 |
81. Substrate specificity of the nudix hydrolase Ndx7 from Thermus thermophilus HB8Daisuke Yamagishi1, Ryoji Masui1,2 and Seiki Kuramitsu1,2 |
82. Analysis of Polyamine Biosynthetic Pathway of the Thermus thermophilusMio Ohnuma1, Yusuke Terui1, Mizue Nagai1, Hiromi Ito1, Aya Chitose1, Masatada Tamakoshi1, Shin-ichi Yokobori1, Masaru Niitsu2, Keijiro Samejima2, Tairo Oshima1 |
83. Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8Hiroaki Sakai1, Hongfei Wang1, Chie Takemoto-Hori1, Tatsuya Kaminishi1,2, Hiroto Yamaguchi1, Yuki Kamewari1, Takaho Terada1,3, Seiki Kuramitsu1,3,4, Mikako Shirouzu1,4 and Shigeyuki Yokoyama1,2,4 |
